org.jscience.ml.sbml
Class SBMLLevel2Reader

java.lang.Object
  org.xml.sax.helpers.DefaultHandler
      org.jscience.ml.sbml.SBMLLevel2Reader

All Implemented Interfaces:

org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler

public final class SBMLLevel2Reader
extends org.xml.sax.helpers.DefaultHandler

Reads a SBML Level 2 file into a Model.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Method Summary

void	characters(char[] ch, int start, int length)
void	endElement(java.lang.String namespace, java.lang.String localName, java.lang.String qName)
void	error(org.xml.sax.SAXParseException spe)
void	fatalError(org.xml.sax.SAXParseException spe)
static Model	read(java.io.Reader reader)
static Model	read(java.lang.String filename)
void	startElement(java.lang.String namespace, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attributes)
void	startPrefixMapping(java.lang.String prefix, java.lang.String uri)
void	warning(org.xml.sax.SAXParseException spe)

Methods inherited from class org.xml.sax.helpers.DefaultHandler

endDocument, endPrefixMapping, ignorableWhitespace, notationDecl, processingInstruction, resolveEntity, setDocumentLocator, skippedEntity, startDocument, unparsedEntityDecl

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

read

public static Model read(java.lang.String filename)
                  throws java.lang.Exception

Throws:

java.lang.Exception

read

public static Model read(java.io.Reader reader)
                  throws java.lang.Exception

Throws:

java.lang.Exception

characters

public void characters(char[] ch,
                       int start,
                       int length)
                throws org.xml.sax.SAXException

Specified by:

characters in interface org.xml.sax.ContentHandler

Overrides:

characters in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

endElement

public void endElement(java.lang.String namespace,
                       java.lang.String localName,
                       java.lang.String qName)
                throws org.xml.sax.SAXException

Specified by:

endElement in interface org.xml.sax.ContentHandler

Overrides:

endElement in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

error

public void error(org.xml.sax.SAXParseException spe)
           throws org.xml.sax.SAXException

Specified by:

error in interface org.xml.sax.ErrorHandler

Overrides:

error in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

fatalError

public void fatalError(org.xml.sax.SAXParseException spe)
                throws org.xml.sax.SAXException

Specified by:

fatalError in interface org.xml.sax.ErrorHandler

Overrides:

fatalError in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

startElement

public void startElement(java.lang.String namespace,
                         java.lang.String localName,
                         java.lang.String qName,
                         org.xml.sax.Attributes attributes)
                  throws org.xml.sax.SAXException

Specified by:

startElement in interface org.xml.sax.ContentHandler

Overrides:

startElement in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException

startPrefixMapping

public void startPrefixMapping(java.lang.String prefix,
                               java.lang.String uri)

Specified by:

startPrefixMapping in interface org.xml.sax.ContentHandler

Overrides:

startPrefixMapping in class org.xml.sax.helpers.DefaultHandler

warning

public void warning(org.xml.sax.SAXParseException spe)
             throws org.xml.sax.SAXException

Specified by:

warning in interface org.xml.sax.ErrorHandler

Overrides:

warning in class org.xml.sax.helpers.DefaultHandler

Throws:

org.xml.sax.SAXException